ELMOD3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004532
Fusion event
HBV-ELMOD3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
85612803/85385680 (Hg38)
End
85612803/85385680 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
ELMOD3
Nearest miRNA
hsa-mir-1285-2/Upstream/5519097; hsa-mir-10b/Downstream/397920;
Nearest TSS
ENST00000437798/Upstream/8798; ENST00000486908/Downstream/1466;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/30840, chr2-CpG: 29/Downstream/28166
Upstream sequence
tcaggccatctggatttatacgtacaggtttgggcccagaggcctgacaggaagggcagtaggagaggtggtcgtagatgatgggccagagggcgcaggg
Downstream sequence
cctagcaggccatggaaaggactctaggttttacgctaggtaaaatgaggaggcactgcagggctttgagcagcagagtaacacagtctaacttactttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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