Basic Information
VIS ID
TVIS10004535
Fusion event
HBV-LOC107522029 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
7761714/7761714 (Hg38)
End
7761714/7761714 (Hg38)
Location type
Intronic
Target gene
LOC107522029
Nearest miRNA
hsa-mir-101-2/Upstream/1753810; hsa-let-7a-1/Downstream/10811592;
Nearest TSS
ENST00000422679/Upstream/633807; ENST00000430766/Downstream/24974;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1002842, chr9-CpG: 43/Downstream/37641
Nearby gene
KDM4C(-586066) ; DMAC1(+34777) ;
Upstream sequence
aaaattaacctctttattttgttataatatagatttgcatatggttgtaagaaataacacagagagacatcaaataggctttatccagtttctctcagtg
Downstream sequence
CCAATTTTGGCTGGTCCTTAATCTTCTTATCTAGGTCTTACTATTGTTCCTTCTTTCACTGCTATCCATTAAACTGAAATGAACCCTCTCTTCTTGATCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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