Basic Information
VIS ID
TVIS10004537
Fusion event
HBV-CARM1P1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
2980003/2980003 (Hg38)
End
2980003/2980003 (Hg38)
Location type
Intronic
Target gene
CARM1P1
Nearest miRNA
hsa-mir-1302-9/Upstream/2949722; hsa-let-7a-1/Downstream/1870294;
Nearest TSS
ENST00000422679/Upstream/135762; ENST00000452746/Downstream/201586;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/46279, chr9-CpG: 82/Downstream/201003
Nearby gene
PUM3(-135873) ; RFX3(+238294) ;
Upstream sequence
AATTGAGACTGCTCTGAGGATTTCCAGTGCCAAGTCCTGCATCAGGGAGGGCTCATTTTGTAGCTCTGACATAGGATGGATATAATAAGCCCTTATTTGG
Downstream sequence
AGAGTTGCACCCTGTAGTGACAGCTTTGGTTTCACCTGTGATTGAAGTTCATTTGCACAGAGGGTGCCCCTGAAGAAAAACACATTTCCCCTTCCAGCAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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