DNAJC1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004556
Fusion event
HBV-DNAJC1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
22251408/21962479 (Hg38)
End
22251408/21962479 (Hg38)
Location type
Intronic
Target gene
DNAJC1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-1265/Upstream/465838; hsa-mir-107/Downstream/2313206;
Nearest TSS
ENST00000439456/Upstream/101573; ENST00000564681/Downstream/40920;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/426998, chr10-CpG: 77/Downstream/40566
Upstream sequence
GAGATGGCTCTATTTTTACTCTAAACTCTAAATTCTATTCTATCCATCTAGGATGCAATTAAAACTTGCTATTTTATTGCtttttttttttttttttttt
Downstream sequence
tttgagacagttatctcactctgtcacccaggctggagtgcagtggcaccaacacatggttcactgcagccctgacctcctgggctcaaatgatccttcc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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