TNFRSF17 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004557
Fusion event
HBV-TNFRSF17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
12055529/11961672 (Hg38)
End
12055529/11961672 (Hg38)
Location type
Promoter
Target gene
TNFRSF17
miRNAs that regulate target gene
hsa-mir-132-3p
Nearest miRNA
hsa-mir-1225/Upstream/655145; hsa-mir-11401/Downstream/758649;
Nearest TSS
ENST00000527434/Upstream/19627; ENST00000562385/Downstream/3435;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/45415, chr16-CpG: 53/Downstream/14728
Upstream sequence
agttcgagaccagcctggccaacatactgaaaccccgtctctactaaaaatacaaaaattagccaggcctggaggcacgcacctgtaatcccagctacta
Downstream sequence
gggaggctgaggcaagagaatggcttgaacctgggagacggaggttgcagtgagctgaaattttgccaccacactccagcctgggtgacagagtgagacc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate