Basic Information
VIS ID
TVIS10004562
Fusion event
HBV-LOC107986777 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
24407440/24367821 (Hg38)
End
24407440/24367821 (Hg38)
Location type
Intronic
Target gene
LOC107986777
Nearest miRNA
hsa-mir-1183/Upstream/2896675; hsa-mir-10399/Downstream/1582098;
Nearest TSS
ENST00000635602/Upstream/82714; ENST00000625307/Downstream/205447;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/82360, chr7-CpG: 108/Downstream/205188
Nearby gene
NPY(-75956) ; MPP6(+205645) ;
Upstream sequence
ttcaagcaattctcctgcctcaggctcccaagtagctgggattgcaggtgtgcaccaccataccaggctaatgtttgtattttagtagaaacggggtttc
Downstream sequence
TGCAGCGTGTTGGAGGTGGTGCAGAGGCCATGGGGAGGAGGGAAAGAAGGAAATATCAGTGTGTCTGACAGACTTCAGAATAGGAGACACCCCAAAGAAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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