REM1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004563
Fusion event
HBV-REM1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
30067939/31480136 (Hg38)
End
30067939/31480136 (Hg38)
Location type
Intronic
Target gene
REM1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/5271858; hsa-mir-1-1/Downstream/127050;
Nearest TSS
ENST00000382410/Upstream/3379; ENST00000435497/Downstream/5642;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/4658, chr20-CpG: 42/Downstream/3973
Upstream sequence
agagatcatgccattgcactccagcctaggcaacaagagcaaaactctgtctcaaaaaaaataaataaataaataataaaaaTCAAATTATCAGGCCTCA
Downstream sequence
CCCTGGCCCTCACCCTcagcctgggcaacagagcaagactccatctcaataaagatagatagatagatagatagatagatagatagatagatagacagat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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