TOX _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004565
Fusion event
HBV-TOX integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
59967472/59054913 (Hg38)
End
59967472/59054913 (Hg38)
Location type
Intronic
Target gene
TOX
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-223-3p
Nearest miRNA
hsa-mir-124-1/Upstream/16158638; hsa-mir-10400/Downstream/2659875;
Nearest TSS
ENST00000518652/Upstream/395069; ENST00000523683/Downstream/64127;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/394946, chr8-CpG: 175/Downstream/62662
Upstream sequence
acatcattatgcggtgcatgactgcataaatttgggtatggatatagatatagacagagatatcttcagccctgaacagtctccttaactccatacttaa
Downstream sequence
gagaaagaaagaaagaaaaagaaagaaaggaaaaagagaggagggagggaggaaggaagggacggagggagggagggagggaaaggaaaaaaaaagagtc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate