VISDB Viral Integration Site DataBase

VIS ID

TVIS10004570

Fusion event

HBV-RNF165 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr18

Cytoband

q21.1

Reference genome

Start

End

44009748/46429785 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-8081 ; hsa-mir-6516-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-298 ; hsa-mir-6838-3p ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-5197-3p ; hsa-mir-3926 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-1972 ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-6741-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-8063 ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-4668-3p ; hsa-mir-4680-5p ; hsa-mir-6734-5p ; hsa-mir-8075 ; hsa-mir-6778-3p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-4279 ; hsa-mir-498 ; hsa-mir-3653-5p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-129-5p ; hsa-mir-7850-5p ; hsa-mir-4529-3p ; hsa-mir-4520-2-3p ; hsa-mir-8058 ; hsa-mir-5009-5p ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-4515 ; hsa-mir-1288-3p ; hsa-mir-4740-5p ; hsa-mir-6857-3p ; hsa-mir-4682

Nearest miRNA

hsa-mir-1-2/Upstream/1459619; hsa-mir-122/Downstream/950711;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/95271, chr18-CpG: 20/Downstream/130614

Upstream sequence

ttttccatagcatttttacaaattcttaccaaactctctatcacattataaaattccttcaaataCTATTTTTTAAAATACtctttttttttcctttctt

Downstream sequence

ttattgagatggggtcttgctatgttgtccaggctggtcttgaacccctgacctcaagtggtcctcttgccttaccctcctaagtaatcccaaagtgttg