AMN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004572
Fusion event
HBV-AMN1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
31834205/31681271 (Hg38)
End
31834205/31681271 (Hg38)
Location type
Intronic
Target gene
AMN1
Nearest miRNA
hsa-mir-1244-3/Upstream/5807192; hsa-let-7i/Downstream/10642429;
Nearest TSS
ENST00000382841/Upstream/19334; ENST00000619086/Downstream/33680;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/21814, chr12-CpG: 51/Downstream/47720
Upstream sequence
tttttttGATGTGATGACTCAAGGTAGAATATATTGTATGAACTCTTGCATTATTAtttttatttattttttttgagacgaagtttcgctcttgttgctc
Downstream sequence
aggctggagtatagtggcatgaccttggctcactgcaacctctgcctcctgcgttcaagcaattctcctgccttagcctcctgagtagctggaattacag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate