Basic Information
VIS ID
TVIS10004573
Fusion event
HBV-LOC105370805 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
48295959/48003762 (Hg38)
End
48295959/48003762 (Hg38)
Location type
Intronic
Target gene
LOC105370805
Nearest miRNA
hsa-mir-10393/Upstream/2570633; hsa-mir-11181/Downstream/1165308;
Nearest TSS
ENST00000557528/Upstream/59718; ENST00000482911/Downstream/117210;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/284915, chr15-CpG: 53/Downstream/174048
Nearby gene
SEMA6D(-229539) ; SLC24A5(+117210) ;
Upstream sequence
taatatgatctccattttgcccaagtctcaccaggaggtgaagtggcttatccaaggtcacacaaccaataaatggagaccttaagcccaccaggtcttt
Downstream sequence
tggcttcaaaccttatcccacttccactccaccatgttactttcctttgCAGAATATCCACAGGAATCAGCCCTTTACTATATTTTCTCATTTGCTTTAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate