Basic Information
VIS ID
TVIS10004575
Fusion event
HBV-NSD2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
End
1982042/1980315 (Hg38)
Location type
UTR3
Target gene
Nearest miRNA
hsa-mir-571/Upstream/1630063; hsa-mir-12113/Downstream/6069;
Nearest CpG islands
Nearest cancer related gene
NSD2(OG, No orient, 0)
Upstream sequence
GTTCAGCTTACCTAGTTAGCTTTTCCTAGGTACTGTGCACAATTGCATTAATCAGGCAAGATCCATCCAGATAATAAATATATCTGTAATTATGGAAGAC
Downstream sequence
GAGAAGGGGGCACCATGTGTGCCTTTGCCCACGTGTCCTGAGGGGCTGCTTGTCTGGGAGGGAGGGAGAGAACATTCAGCAGCAGGTGCTTTTTTATGGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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