Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004577
Fusion event
HBV-DNPEP integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
220252812/219388090 (Hg38)
Location type
Promoter
Target gene
miRNAs that regulate target gene
hsa-mir-140-5p ; hsa-mir-218-5p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-760 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-7158-5p ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-3156-3p ; hsa-mir-4474-5p ; hsa-mir-4755-3p ; hsa-mir-532-3p ; hsa-mir-554 ; hsa-mir-4301 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-483-3p ; hsa-mir-8057 ; hsa-mir-6822-3p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-149-5p ; hsa-mir-4794 ; hsa-mir-664a-5p
Nearest miRNA
hsa-mir-10b/Upstream/93890; hsa-mir-1244-1/Downstream/160983;
Nearest CpG islands
chr2-CpG: 147/Target, None/Upstream, None/Downstream
Upstream sequence
cggtcagccccgcccctcggcgggcttaccctgtccgctccgccccTCGCTGGGCACCACCAcccgccttgccccgcccttgccccgcccctagcttggc
Downstream sequence
cgcaccgcccgccccgccccgccccTCGCCAGGAAGCACCGcccgccctgcccctcgcagggctgcaccgcccgccccgcccctcgtcaagcttcctcgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.