Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004581
Fusion event
HBV-CTNND2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
Start
End
11172262/11172150 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/694005; hsa-mir-103a-1/Downstream/3653779;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/410337, chr5-CpG: 115/Downstream/212419
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
CTTCCCAATTGAACCCTTCCATCATTACCttttatatatattttattattaGCACTGGAATTCCAGCAGAGCTACAATTGTATTACCATAATTTTGTTCG
Downstream sequence
aaaatctggaaagtgatctggggtgggtcctgctacctaagaattttttttaaaaagtagccagagtgagggaccactggggctgggaGTTATTTTATCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.