KIF26B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004583
Fusion event
HBV-KIF26B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
245693565/245530263 (Hg38)
End
245693565/245530263 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
KIF26B
miRNAs that regulate target gene
hsa-mir-4530 ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-634 ; hsa-mir-629-3p ; hsa-mir-3944-3p ; hsa-mir-627-3p ; hsa-mir-6795-3p ; hsa-mir-4279 ; hsa-mir-501-5p ; hsa-mir-20a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2184008; hsa-mir-3124/Downstream/1671704;
Nearest TSS
ENST00000473358/Upstream/19261; ENST00000483253/Downstream/84882;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/194347, chr1-CpG: 17/Downstream/47428
Upstream sequence
ccaaaaatcaggcaataacaaatgctggtgaggatgtggagaaaagggaaccctcatacactgtggatgggaatgtaaattagtacaaccactgtagaga
Downstream sequence
acagtttggagcttcctcaaaaaactaacaattgaactaccacgcaatctagcaatggtagtactgggtatttatccaaaggataggaggtcagtatatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate