Basic Information
VIS ID
TVIS10004593
Fusion event
HBV-LOC107984361 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
87482624/87771732 (Hg38)
End
87482624/87771732 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA11F
Target gene
LOC107984361
Nearest miRNA
hsa-mir-10392/Upstream/1493334; hsa-let-7a-2/Downstream/404770;
Nearest TSS
ENST00000527297/Upstream/52321; ENST00000532849/Downstream/278374;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/733681, chr11-CpG: 45/Downstream/403343
Nearby gene
TMEM135(-442748) ; RAB38(+363791) ;
Upstream sequence
TATGTGAACATAAATGCACATCACAATGAAAGGCAGAATAATTATAAGACATTAGGTTGCACTAAAATGAGGCCATAGGGTCAATACTATCTTCATAGAG
Downstream sequence
CAGAGCTGAAGGAAGTGCACATTAATTCTGATATTATTTATGCTTACAAAGTAGAATCTGGGGGCTCTCTGATTTAAGTACCTAGTGGCTTAAACTCACT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate