Basic Information
VIS ID
TVIS10004595
Fusion event
HBV-LOC102723396 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
20237759/20226437 (Hg38)
End
20237759/20226437 (Hg38)
Location type
Intronic
Target gene
LOC102723396
Nearest miRNA
hsa-mir-1225/Upstream/1731861; hsa-mir-11401/Downstream/1279612;
Nearest TSS
ENST00000527434/Upstream/17512; ENST00000577173/Downstream/97316;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/152454, chr16-CpG: 74/Downstream/122008
Nearby gene
GPR139(-152659) ; GP2(+84052) ;
Upstream sequence
agctggaaagtgaatatctcgcttgtttagtctccatagtggaaaacaggaaaaggTGAAGGCGTATTGAAAATGACTCCAACTGTGCCAGCAGTTCCTA
Downstream sequence
TTAattcctcacttctttctttataacagaacttttttgttgttgttgtttaagaatgtgattcagggtaggatgaatcatttccagtcccaagggatga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate