hsa-mir-3691-3p _LIHC.png
PDE1A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004599
Fusion event
HBV-PDE1A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
183378833/182514106 (Hg38)
End
183378833/182514106 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
PDE1A
miRNAs that regulate target gene
hsa-mir-133b ; hsa-mir-133a-3p ; hsa-mir-5587-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-3691-3p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-1264
Nearest miRNA
hsa-mir-10b/Upstream/1208454; hsa-mir-1244-1/Downstream/1864869;
Nearest TSS
ENST00000437798/Upstream/87058; ENST00000469118/Downstream/8206;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/621314, chr2-CpG: 53/Downstream/201860
Upstream sequence
caccccacagcatttctatacaccagtaacatccaagctgagagccaaatcagggacgcaatcccattcacaatagccacagaaagaataaaatacctag
Downstream sequence
aaatactactaaccagggaagtaaaagatttctacaacaagaattacaaaacactgcttaaagaaatcagagatgacacaaataaatggaaaaacattcc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate