VISDB Viral Integration Site DataBase

VIS ID

TVIS10004606

Fusion event

HBV-CDH6 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr5

Cytoband

p13.3

Reference genome

Start

End

31280277/31280170 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-7-1-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-3681-3p ; hsa-mir-194-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-302f ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-6748-5p ; hsa-mir-6819-5p ; hsa-mir-6737-5p ; hsa-mir-6812-5p ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-5196-5p ; hsa-mir-342-5p ; hsa-mir-4747-5p ; hsa-mir-4533 ; hsa-mir-1252-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-3680-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-3185 ; hsa-mir-4511

Nearest miRNA

hsa-mir-10397/Upstream/14124178; hsa-mir-103a-1/Downstream/655932;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/85858, chr5-CpG: 42/Downstream/251833

Upstream sequence

GAATTTACCTTCCTTAGCTCATCTTAAGACATTTTAATATATTCTCAACTGCCACTAAGAGTAAGTTAAAGACATTCTATGATATTCCTCTAAAAAAATT

Downstream sequence

GAATTCAACACAAGAGAAAGTATTCCCTGGCAGGCTACGAGTCATCACAGATTATCTTTTAGCAGAGTTTCATGGCAGAAAACTTGTAGTGAAGATAGGG