ANXA8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004617
Fusion event
HBV-ANXA8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
49078915/47681549 (Hg38)
End
49078915/47681549 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
ANXA8
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-1265/Upstream/2517461; hsa-mir-107/Downstream/1303963;
Nearest TSS
ENST00000439456/Upstream/81719; ENST00000576178/Downstream/81158;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/115499, chr10-CpG: 39/Downstream/24271
Nearby gene
GLUD1P2(-120832) ; FAM25G(+124458) ;
Upstream sequence
GGCAGGCATACCCCTGGCACCTACCTGTGAGTTCATGATTACTAGTTTTAAAGTTCAGTCCTTTTTATTTTTACttttttttttttttttttttttttta
Downstream sequence
gagacagtgtctcactctgtcatccaggctggagtgcagtggcacaatcacggcttactgtagccttgatctcccaggctcaggtgatcctttcacttca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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