Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004634
Fusion event
HBV-ARMC3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p12.2
Reference genome
Start
End
23213207/22924278 (Hg38)
Location type
Promoter
Target gene
Nearest miRNA
hsa-mir-1265/Upstream/1427637; hsa-mir-107/Downstream/1351407;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/209880, chr10-CpG: 47/Downstream/171354
Upstream sequence
caaactggaaagtaccagaatgtccatcaatcagtaaatggatgttgtacatctatgcagtgcaataccactcagccataaagtgagataagctatggat
Downstream sequence
aaatgcaacaccatggacaaatctcctaaactatgctaaattaaagaagccagacacaaaatacagcatattgcatggttctgtttataagacattctag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.