Basic Information
VIS ID
TVIS10004665
Fusion event
HBV-LOC101930041 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2308
Orient
-
Integrated sequence
TCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAAT| |GCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAAT
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69738870/68873152 (Hg38)
End
69738870/68873152 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101930041
Nearest miRNA
hsa-mir-12113/Upstream/2596224; hsa-mir-1243/Downstream/7700416;
Nearest TSS
ENST00000502981/Upstream/57157; ENST00000502942/Downstream/33831;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/522949, chr4-CpG: 55/Downstream/1814985
Junction sequence
ACTACCGTGCTGGTAGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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