hsa-mir-422a _LIHC.png
TERT _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004666
Fusion event
HBV-TERT integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1836
Orient
-
Integrated sequence
GAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCT| |AATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCT
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
End
1275390/1275275 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-4635/Upstream/212301; hsa-mir-10397/Downstream/34035;
Nearest CpG islands
Nearest cancer related gene
TERT(OG, No orient, 0)
Upstream sequence
cttatatatatgtatgcatatatatatatatatatcacaatttctttatcttctcattgattgatggccatttgggctggttccatatttttgcaattgc
Downstream sequence
aggcaagagaattgcttgaactcaggaagcacaggttgcagtgagccaagatcacgccaaaccactccagcctgggcaaaaaagagcgagactctgttat
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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