Basic Information
VIS ID
TVIS10004696
Fusion event
HBV-LINC01605 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1025
Orient
+
Integrated sequence
TACGGAAACTCAAGCAATGTTTTCGAAAACTGCCTGTAAATAGACCTATTGATTGGAAAGTATGTCAAAGAATTGTGGGTCTTTTGGGCTTTGCTGCCCC| |TTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTATATGCATGTATACAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGT
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
37337658/37480140 (Hg38)
End
37337658/37480140 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01605
Nearest miRNA
hsa-mir-124-1/Upstream/7522792; hsa-mir-10400/Downstream/3790908;
Nearest TSS
ENST00000518652/Upstream/51; ENST00000522643/Downstream/13694;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2243547, chr8-CpG: 351/Downstream/214286
Junction sequence
GTTTTTCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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