Basic Information
VIS ID
TVIS10004699
Fusion event
HBV-LOC105371497 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1825
Orient
+
Integrated sequence
AGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAAT
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
162454175/162484385 (Hg38)
End
162454175/162484385 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371497
Nearest miRNA
hsa-mir-101-1/Upstream/141745; hsa-mir-1182/Downstream/3423536;
Nearest TSS
ENST00000473358/Upstream/72247; ENST00000282169/Downstream/12866;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/116854, chr1-CpG: 49/Downstream/13424
Junction sequence
TTTTATTTTTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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