Fusion event
HBV-DENND1B integration
Detection method
PCR and Ultra-deep sequencing
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Integrated sequence
AGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAAT
End
197486025/197516895 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/934414; hsa-mir-1182/Downstream/1341978;
Upstream sequence
ATATTAACTATGCAGGACCTGAAATGTAAATGACTATGATAGAGAAAAATAATCTGAACCCACACaataaaaataaaaaatatatacattattttaaCAC
Downstream sequence
AATTGGGTATAGTGacttatccttcaacatccagctcaaatgtagcctctggaaagctttatctgctaagtgttcctctgtatggccacatatttggtaa
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).