DENND1B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004701
Fusion event
HBV-DENND1B integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1825
Orient
-
Integrated sequence
AGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAAT
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
End
197486025/197516895 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/934414; hsa-mir-1182/Downstream/1341978;
Upstream sequence
ATATTAACTATGCAGGACCTGAAATGTAAATGACTATGATAGAGAAAAATAATCTGAACCCACACaataaaaataaaaaatatatacattattttaaCAC
Downstream sequence
AATTGGGTATAGTGacttatccttcaacatccagctcaaatgtagcctctggaaagctttatctgctaagtgttcctctgtatggccacatatttggtaa
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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