Basic Information
VIS ID
TVIS10004733
Fusion event
HBV-LINC02261 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1826
Orient
+
Integrated sequence
GGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATT
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
27250633/27249011 (Hg38)
End
27250633/27249011 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LINC02261
Nearest miRNA
hsa-mir-12113/Upstream/2728721; hsa-mir-1243/Downstream/1570571;
Nearest TSS
ENST00000502981/Upstream/30607; ENST00000509416/Downstream/18243;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/387395, chr4-CpG: 55/Downstream/3029088
Upstream sequence
ATAGTATTTTGTATTTGTGAAGTCTTACAAGGTTATCTTATTAATAAAATTCAAACATCCTAGGTAAAAAAAAAAAAAGGTCAGAATTGTTTAGTGACTG
Downstream sequence
tccattggcagttttcccatctaagttaatggtaactctagttgctcaggccaacagtataaagaattatacatgacttcttttttccactctcacatcc
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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