Basic Information
VIS ID
TVIS10004735
Fusion event
HBV-chr5 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2177
Orient
+
Integrated sequence
CTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAATTAGTAGTCAGCTATGTCAATGTTAATA| |TGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGAT
Host Sequence
Chromosome
chr5
Cytoband
p15.31
Reference genome
End
8082001/8081888 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/1253967; hsa-mir-10397/Downstream/379037;
Nearby gene
LOC102723339(-7262) ;
Upstream sequence
ATATATTTTCCTTTCCACTATTTTTCTTTCATCAACATAACCTCAAATCAATATTATTATTTTTCTTCTTTTACCTCACTGCAGACCAGACTTTCCCTTG
Downstream sequence
CCTTTGATGGAAGATGTAAGGAGGTGGGCCTGTGTTGAAGCCCTCCTGAGTATGGCTACTGTTCCTATCGGCCTATGACTAGAGAAGCCCAGGAACTAAC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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