Basic Information
VIS ID
TVIS10004736
Fusion event
HBV-chr5 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1776
Orient
+
Integrated sequence
GCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAG| |GAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAG
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
116684394/117348698 (Hg38)
End
116684394/117348698 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/1092864; hsa-mir-103a-1/Downstream/1625888;
Nearest TSS
ENST00000502646/Upstream/317498; ENST00000504107/Downstream/66811;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/772010, chr5-CpG: 69/Downstream/1639454
Nearby gene
LOC105379139(+8284) ;
Upstream sequence
TGCAAAATCTCAGTTTTTGTGTAAATCATGCATAATGTTCCAATTTATTTTTGTCAGAGCATAGATCTTTAGTTGGCCCTTGTCAAATACAAGTGTATAT
Downstream sequence
GTCAGCTGGGCTGGCTGTAAATGTATCCTGGTGATTTCACCTTTTTAACTCTCTGTAAATAAAACTTCAATTTGTTATTTTAACTCAAACTAAATTCACC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate