FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004775
Fusion event
HBV-FN1 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1827
Orient
+
Integrated sequence
GACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTT
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216300004/215435281 (Hg38)
Orient
+
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1677122; hsa-mir-1244-1/Downstream/2465232;
Upstream sequence
AAAGAGGTCTGAACCAATTACATCTCTTCCAAGTTAGTTAGAAACAAGACAGCTATTTCAATACCCCCTTTCCACCCCCATGTTGAAAATATTTGACCAA
Downstream sequence
TTATTTAACAGAAGGAAATAAGTAGCAGTAAGGACCACACTAATCCCAGACGGAAAATTTATAGACATGCATCATTTTTCTCTTTAAAGGCAAGTTTTGG
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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