OPRD1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004783
Fusion event
HBV-OPRD1 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1826
Orient
+
Integrated sequence
GGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATT
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
29189773/28863261 (Hg38)
End
29189773/28863261 (Hg38)
Orient
+
Location type
Exon
Target gene
OPRD1
miRNAs that regulate target gene
hsa-mir-744-5p ; hsa-mir-4804-5p ; hsa-mir-6775-5p ; hsa-mir-184 ; hsa-mir-5090 ; hsa-mir-500b-3p ; hsa-mir-1912 ; hsa-mir-1295b-5p
Nearest miRNA
hsa-mir-12136/Upstream/2308668; hsa-mir-101-1/Downstream/1875895;
Nearest TSS
ENST00000473358/Upstream/51119; ENST00000645999/Downstream/14075;
Nearest CpG islands
chr1-CpG: 64/Target, None/Upstream, None/Downstream
Upstream sequence
GCCGCAAGCCCTGCGGCCGCCCAGACCCCAGCAGCTTCAGCCGCGCCCGCGAAGCCACGGCCCGCGAGCGTGTCACCGCCTGCACCCCGTCCGATGGTCC
Downstream sequence
CGGCGGTGGCGCTGCCGCCTGACCAGGCCATCCGGCCCCCAGAGCGCCCCTCCCTAGTGACCCGGAGGCCACATGAGTCCCAGTGGGAGGCGCGAGCCAT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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