Basic Information
VIS ID
TVIS10004823
Fusion event
HBV-LINC02777 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1916
Orient
-
Integrated sequence
CAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGT| |ATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCG
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
GRCh37/hg19
Start
59466786/59001114 (Hg38)
End
59466786/59001114 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LINC02777
Nearest miRNA
hsa-mir-12136/Upstream/3775391; hsa-mir-101-1/Downstream/732113;
Nearest TSS
ENST00000473358/Upstream/67471; ENST00000424308/Downstream/19252;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/96886, chr1-CpG: 39/Downstream/145621
Upstream sequence
aaatgctaaaggaagttcttcaggtggagagggaatgataaaacaacaaaaatacttggactttaggaatgaagaaagCATaagataaaaagagaaaaga
Downstream sequence
tataatttaccaatatctggaacaaaaaagaggctatcaccgcagaactcacagattttaaaggataattgatatactataaataactcataaatttgac
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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