Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004845
Fusion event
HBV-OR2L13 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1818
Orient
+
Integrated sequence
TTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTAT
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
End
248110313/247947011 (Hg38)
Orient
+
Location type
OR2L13,intron OR2L8,promoter
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/744951; hsa-mir-3124/Downstream/879366;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9587, chr1-CpG: 49/Downstream/744718
Junction sequence
CC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).