OR2L13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004846
Fusion event
HBV-OR2L13 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1857
Orient
-
Integrated sequence
TTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCC| |TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTG
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
248110333/247947031 (Hg38)
End
248110333/247947031 (Hg38)
Orient
-
Location type
OR2L13,intron OR2L8,promoter
Fragile sites / regions
FRA1I
Target gene
OR2L13
Nearest miRNA
hsa-mir-101-1/Upstream/744971; hsa-mir-3124/Downstream/879346;
Nearest TSS
ENST00000473358/Upstream/22142; ENST00000623922/Downstream/1827;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9607, chr1-CpG: 49/Downstream/744698
Junction sequence
T
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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