Basic Information
VIS ID
TVIS10004876
Fusion event
HBV-chr12 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2329
Orient
-
Integrated sequence
TGGAAGAGAAACTGTTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTT| |CCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTC
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
End
77665075/77271295 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/7686472; hsa-mir-1178/Downstream/2147962;
Upstream sequence
TATAAAGCCAGTGACAAGGAATTTGAATTTTATTGTGCTTTTATTTTATAAATTAAAGGACATTATTATTTGGATAGTGCTTTGGAAAACATGACTTTAT
Downstream sequence
TTTGAAATGTTTTTTTTTTCTACAAAATGTTGAGTTAGCAGGTTTATGTGGCAATAGAGAAACAGAAAAATAATGCAATGAAGAGCCAGCTATCATTGAA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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