Basic Information
VIS ID
TVIS10004888
Fusion event
HBV-chr13 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1895
Orient
-
Integrated sequence
GGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT| |GGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGA
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
55879677/55305542 (Hg38)
End
55879677/55305542 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/130994; hsa-mir-1267/Downstream/5894256;
Nearest TSS
ENST00000623511/Upstream/242597; ENST00000377931/Downstream/277982;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2103332, chr13-CpG: 25/Downstream/1835295
Upstream sequence
TATAAGAGGCAAAAGTATTGCTGTGTAGTTATATTGATTTTTTATTTGTTCATTTTAAATAAAGGGAAATCTTAACTCTTTTATTTTTAGAGAAATACAT
Downstream sequence
AAGGCAGGACCAGAGTAAATAAGTGGAGATAACAGAAATCTTAAGTAGTTGACAGACTGAGTTTTATGCTATTTTCTATGGAAATTACTTAGCAGTATAT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate