Basic Information
VIS ID
TVIS10004890
Fusion event
HBV-chr13 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1370
Orient
+
Integrated sequence
CTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCAAAACTTATCGGGACTGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTT| |CCCATGGCTGCTCGGGTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGC
Host Sequence
Chromosome
chr13
Cytoband
q21.32
Reference genome
End
66175706/65601574 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-1297/Upstream/4401694; hsa-mir-1267/Downstream/364756;
Upstream sequence
tggccCAACTAAATAATTTTTTAAAACATCCTTTTAGAAGTTGGTCTGTATAAAATGAGTTTATGTACAAAACATTTATTTCATTTTCTCCTAAAGCTTC
Downstream sequence
ATTTTATCTTAAATTATTAACAAAGTCCATAATTTTAATTTGAAATGGAATTAAAAGAAATGTCAGGCTAATAATTGTAATTATATATTTTCTATTTTAT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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