Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004921
Fusion event
HBV-FTSJ3 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
885
Orient
-
Integrated sequence
CCTTTTTACCTCTATTACCAATTTTCTTTTGTCTTTGGGTATACATTTGAACCCTAATAAAACCAAACGTTGGGGCTACTCCCTTAACTTCATGGGATAT| |GTAATTGGAAGTTGGGGTACTTTACCACAGGAACATATTGTACGGAAACTCAAGCAATGTTTTCGAAAACTGCCTGTAAATAGACCTATTGATTGGAAAG
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
Start
End
61898354/63820994 (Hg38)
Orient
-
Location type
Intron
Target gene
miRNAs that regulate target gene
hsa-mir-330-5p ; hsa-mir-6769b-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-491-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-27a-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-4721 ; hsa-mir-4720-3p ; hsa-mir-873-5p ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-3158-3p ; hsa-mir-1265 ; hsa-mir-2392
Nearest miRNA
hsa-mir-10226/Upstream/876682; hsa-mir-1250/Downstream/679780;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/46292, chr17-CpG: 56/Downstream/6372
Junction sequence
CAGTC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).