Basic Information
VIS ID
TVIS10004936
Fusion event
HBV-LINC02613 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
412
Orient
-
Integrated sequence
GCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCTATCGCTGGATGTGTCTGCGGCGTTTTATCATATTCCTCTTCATC| |CTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGTATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGAC
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
38735794/38508652 (Hg38)
End
38735794/38508652 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02613
Nearest miRNA
hsa-mir-1301/Upstream/3037166; hsa-mir-10b/Downstream/8869023;
Nearest TSS
ENST00000437798/Upstream/25559; ENST00000457097/Downstream/7088;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/131242, chr2-CpG: 48/Downstream/27320
Upstream sequence
AGACAGAAGTCTCCAGAGAGAAAGCCCTCGTGCTTGTTTAGATCAAAGATCCAGACCAAGTGGCCTCGCTTGAGGTCAGCCTTGCTGTTACAAAACAGAA
Downstream sequence
TGATCCCCAGGCAAAGGGCTCAGAGCCAGCTGGGTTAGATGAGGGGCTGCCTGGGTGACCTGATTAGAGGATGCTGTTTCTTGATTGGCCACATCCACTC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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