Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene215442421215360440215436172215311817215349773215326554215329695215331591215333804215367623215368381215352256215352649215357335215357601215351510215351759215358540215358581215377119
FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004955
Fusion event
HBV-FN1 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2434
Orient
-
Integrated sequence
AACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCT| |CGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACT
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
216241842/215377119 (Hg38)
End
216241842/215377119 (Hg38)
Orient
-
Location type
Intron
Target gene
FN1
miRNAs that regulate target gene
hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p
Nearest miRNA
hsa-mir-10b/Upstream/1618960; hsa-mir-1244-1/Downstream/2523394;
Nearest TSS
ENST00000437798/Upstream/1394; ENST00000412951/Downstream/4210;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/64710, chr2-CpG: 43/Downstream/58425
Junction sequence
CTCAATGTAGGACATGAACATGAGATGA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate