CHSY3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005035
Fusion event
HBV-CHSY3 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1828
Orient
-
Integrated sequence
ACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCAC| |CTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTG
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
End
129449050/130113357 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10397/Upstream/716210; hsa-mir-103a-1/Downstream/2104492;
Junction sequence
TTTTTCACCTCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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