Basic Information
VIS ID
TVIS10005111
Fusion event
HBV-LOC107985166 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2487
Orient
-
Integrated sequence
CTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTTACTG| |GGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTAACATTCATTTACAGGAGGACATTATTAATAGATGTCAACA
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
68336103/70668867 (Hg38)
End
68336103/70668867 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985166
Nearest miRNA
hsa-mir-1-2/Upstream/3587181; hsa-mir-548av/Downstream/2184454;
Nearest TSS
ENST00000575820/Upstream/18123; ENST00000563639/Downstream/342623;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/238007, chr18-CpG: 225/Downstream/1872872
Upstream sequence
gaaatcatgctgctataaTAtttgttaacattttgttcttgtattgctttgcttactttatttagttgtgatcttgtagttcattgagcttttttaagct
Downstream sequence
ggttattttgatttgtctcagtttgtaggtcttcattttcttagggttagttactggagctttaccagtttcctttggtTGCGTTGTTAGtggcagtggt
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate