hsa-mir-4434 _LIHC.png
SND1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005152
Fusion event
HBV-SND1 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1839
Orient
-
Integrated sequence
TTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAAT| |CATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTG
Host Sequence
Chromosome
chr7
Cytoband
q32.1
Reference genome
End
127511112/127871059 (Hg38)
Orient
+
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-10525/Upstream/812875; hsa-mir-10399/Downstream/210802;
Upstream sequence
TACTACTGTCTTCACCCTTCATTCATCTTTCTGGTCCTTTTCAGTCCCATCTCGCCCTTCTCCCAGGCACCACCCACTTCTCTTTTTATACAAATTGGTT
Downstream sequence
cctacacagtcaggataatccttatcactgtcttccacctctatatcttgtcccactggaaggttttcagggggcaataatgtaaatggagctgtcatct
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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