Basic Information
VIS ID
TVIS10005156
Fusion event
HBV-chr8 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2149
Orient
-
Integrated sequence
TCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAA| |TTAGTAGTCAGCTATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTG
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
End
122396201/121383961 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-12123/Upstream/2058696; hsa-mir-10400/Downstream/1831827;
Nearby gene
RPL35AP19(-3431) ;
Upstream sequence
aggccttcccagctatgtggaactctgagtcaactaagcctcttttctttttaaattacccagtctcaggtattctttataagttaaaatggactaatgc
Downstream sequence
CCAACTAGAAGTCAGCATTTTTTGGAGTTAATTTAGATTTCCAAGGATATTTCCCAAAATTGCCATGAGATTCATTACTCAATATGCAAGAAAAATTAAT
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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