Basic Information
VIS ID
TVIS10005175
Fusion event
HBV-chr17 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1839
Orient
-
Integrated sequence
TTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAAT| |CATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTG
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
62224052/64146692 (Hg38)
End
62224052/64146692 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/1202380; hsa-mir-1250/Downstream/354082;
Nearest TSS
ENST00000595228/Upstream/722; ENST00000617071/Downstream/8528;
Nearest CpG islands
chr17-CpG: 71/Target, None/Upstream, None/Downstream
Nearby gene
SNHG25(-221) ; TEX2(+741) ;
Upstream sequence
CGCGGACTCTTGATGCGTAAGGAGTGCCCCTCTGCTCCCATACGTTCCCCAGCCCAGCCTTCCCTGAGTGTATCGCGCGCGCTGTGCCTTCGCCGTGAGT
Downstream sequence
TCGACATAAGTCCCAGGCTGTCGCGTCTGCCATCAGACGCGCAGATTTAGTTGAAGGCAGCGTGGAATGGCGTCTGCAGGGCTGTTGTGTACTTGACATA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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