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Viral Integration Site DataBase
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TVIS10005193
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005193
Fusion event
HBV-ZBTB20 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
2011
Orient
-
Integrated sequence
CCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTG| |TATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCT
Host Sequence
Chromosome
chr3
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
114307598/114588751 (Hg38)
End
114307598/114588751 (Hg38)
Orient
+
Location type
Intron
Target gene
ZBTB20
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-26b-5p
;
hsa-mir-21-5p
;
hsa-mir-181b-5p
;
hsa-mir-578
;
hsa-mir-4762-3p
;
hsa-mir-526b-5p
;
hsa-mir-4670-3p
;
hsa-mir-29a-5p
;
hsa-mir-513a-5p
;
hsa-mir-4696
;
hsa-mir-577
;
hsa-mir-548l
;
hsa-mir-8054
;
hsa-mir-548k
;
hsa-mir-548av-5p
;
hsa-mir-559
;
hsa-mir-548y
;
hsa-mir-548w
;
hsa-mir-548o-5p
;
hsa-mir-548j-5p
;
hsa-mir-548i
;
hsa-mir-548h-5p
;
hsa-mir-548d-5p
;
hsa-mir-548c-5p
;
hsa-mir-548bb-5p
;
hsa-mir-548b-5p
;
hsa-mir-548ay-5p
;
hsa-mir-548au-5p
;
hsa-mir-548as-5p
;
hsa-mir-548ar-5p
;
hsa-mir-548aq-5p
;
hsa-mir-548ap-5p
;
hsa-mir-548am-5p
;
hsa-mir-548ak
;
hsa-mir-548ae-5p
;
hsa-mir-548ad-5p
;
hsa-mir-548ab
;
hsa-mir-548a-5p
;
hsa-mir-5582-3p
;
hsa-mir-548f-3p
;
hsa-mir-548e-3p
;
hsa-mir-548az-3p
;
hsa-mir-548ar-3p
;
hsa-mir-548a-3p
;
hsa-mir-340-5p
;
hsa-mir-142-5p
;
hsa-mir-5590-3p
;
hsa-mir-128-3p
;
hsa-mir-3681-3p
;
hsa-mir-27b-3p
;
hsa-mir-216a-3p
;
hsa-mir-27a-3p
;
hsa-mir-144-3p
;
hsa-mir-4789-5p
;
hsa-mir-190a-3p
;
hsa-mir-3941
;
hsa-mir-410-3p
;
hsa-mir-603
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
;
hsa-mir-1277-5p
;
hsa-mir-5580-3p
;
hsa-mir-574-5p
;
hsa-mir-4672
;
hsa-mir-6867-5p
;
hsa-mir-3177-5p
;
hsa-mir-4302
;
hsa-mir-6768-5p
;
hsa-mir-8064
;
hsa-mir-6749-3p
;
hsa-mir-6792-3p
;
hsa-mir-4691-5p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-5193
;
hsa-mir-6832-3p
;
hsa-mir-361-3p
;
hsa-mir-4286
;
hsa-mir-1306-5p
;
hsa-mir-511-3p
;
hsa-mir-217
;
hsa-mir-1-3p
;
hsa-mir-206
;
hsa-mir-2110
;
hsa-mir-3150a-3p
;
hsa-mir-383-5p
;
hsa-mir-409-3p
;
hsa-mir-4271
;
hsa-mir-450a-2-3p
;
hsa-mir-4640-5p
;
hsa-mir-4683
;
hsa-mir-4725-3p
;
hsa-mir-4726-5p
;
hsa-mir-4772-5p
;
hsa-mir-5681b
;
hsa-mir-613
;
hsa-mir-6716-5p
;
hsa-mir-6760-5p
;
hsa-mir-6763-5p
;
hsa-mir-6780b-5p
;
hsa-mir-6810-5p
;
hsa-mir-6857-5p
;
hsa-mir-7515
;
hsa-mir-329-5p
;
hsa-mir-432-3p
;
hsa-mir-432-5p
;
hsa-mir-4764-5p
;
hsa-mir-4768-5p
;
hsa-mir-6809-3p
;
hsa-mir-6817-3p
;
hsa-mir-6833-3p
;
hsa-mir-6873-3p
;
hsa-mir-7110-3p
Nearest miRNA
hsa-let-7g/Upstream/272182; hsa-mir-12124/Downstream/154694;
Nearest TSS
ENST00000440867/Upstream/69085;
ENST00000478301/Downstream/10552;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/236940
,
chr3-CpG: 119/Downstream/557838
Upstream sequence
acattttagataaaatattgtagtagttttggatgctgattcctttaccctctgtgggactttttgttgttgtttggttgtgtatttgattagggacttg
Downstream sequence
ctccactgtaggatacttctttctgttctgttcttccttatgctgaatcttaatccatattagtctgttctcatgctgctatgaagaaatacccaagact
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Sample Information
×
Sample name
RK074_NT
Sample type
Nontumor
Age
69
Gender
Male
CpG Island Information
×
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