hsa-mir-329-5p _LIHC.png
hsa-mir-548ar-3p _LIHC.png
ZBTB20 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005193
Fusion event
HBV-ZBTB20 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2011
Orient
-
Integrated sequence
CCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTG| |TATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCT
Host Sequence
Chromosome
chr3
Cytoband
q13.31
Reference genome
End
114307598/114588751 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-181b-5p ; hsa-mir-578 ; hsa-mir-4762-3p ; hsa-mir-526b-5p ; hsa-mir-4670-3p ; hsa-mir-29a-5p ; hsa-mir-513a-5p ; hsa-mir-4696 ; hsa-mir-577 ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-340-5p ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-27b-3p ; hsa-mir-216a-3p ; hsa-mir-27a-3p ; hsa-mir-144-3p ; hsa-mir-4789-5p ; hsa-mir-190a-3p ; hsa-mir-3941 ; hsa-mir-410-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1277-5p ; hsa-mir-5580-3p ; hsa-mir-574-5p ; hsa-mir-4672 ; hsa-mir-6867-5p ; hsa-mir-3177-5p ; hsa-mir-4302 ; hsa-mir-6768-5p ; hsa-mir-8064 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-5193 ; hsa-mir-6832-3p ; hsa-mir-361-3p ; hsa-mir-4286 ; hsa-mir-1306-5p ; hsa-mir-511-3p ; hsa-mir-217 ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-2110 ; hsa-mir-3150a-3p ; hsa-mir-383-5p ; hsa-mir-409-3p ; hsa-mir-4271 ; hsa-mir-450a-2-3p ; hsa-mir-4640-5p ; hsa-mir-4683 ; hsa-mir-4725-3p ; hsa-mir-4726-5p ; hsa-mir-4772-5p ; hsa-mir-5681b ; hsa-mir-613 ; hsa-mir-6716-5p ; hsa-mir-6760-5p ; hsa-mir-6763-5p ; hsa-mir-6780b-5p ; hsa-mir-6810-5p ; hsa-mir-6857-5p ; hsa-mir-7515 ; hsa-mir-329-5p ; hsa-mir-432-3p ; hsa-mir-432-5p ; hsa-mir-4764-5p ; hsa-mir-4768-5p ; hsa-mir-6809-3p ; hsa-mir-6817-3p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-7110-3p
Nearest miRNA
hsa-let-7g/Upstream/272182; hsa-mir-12124/Downstream/154694;
Upstream sequence
acattttagataaaatattgtagtagttttggatgctgattcctttaccctctgtgggactttttgttgttgtttggttgtgtatttgattagggacttg
Downstream sequence
ctccactgtaggatacttctttctgttctgttcttccttatgctgaatcttaatccatattagtctgttctcatgctgctatgaagaaatacccaagact
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate