Basic Information
VIS ID
TVIS10005199
Fusion event
HBV-chr2 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1819
Orient
-
Integrated sequence
TGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAA| |CTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATA
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
71336146/71109016 (Hg38)
End
71336146/71109016 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2E
Nearest miRNA
hsa-mir-1285-2/Upstream/856011; hsa-mir-10b/Downstream/3981796;
Nearest TSS
ENST00000437798/Upstream/31485; ENST00000468427/Downstream/9368;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/40144, chr2-CpG: 75/Downstream/21041
Nearby gene
MCEE(+660) ;
Upstream sequence
gaaccacatcaatgttgtaatttttactttaacttttaaaTGAAAAGTATAATTGGATATTATACTTGTCTTCCATAACAAGTTCAATGTCTACATATCT
Downstream sequence
ACTCATTTACTCAACATCCACTCATCCATGAACTTGTTAGCCACTTTTCCATCCACTATGCATTCAATGCATCCATCTGTAATCCTTGAAATTCATCTGA
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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