Basic Information
VIS ID
TVIS10005226
Fusion event
HBV-chr11 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1837
Orient
-
Integrated sequence
AGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTA| |ATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTG
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
37954467/37932917 (Hg38)
End
37954467/37932917 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1343/Upstream/1922713; hsa-let-7a-2/Downstream/5626739;
Nearest TSS
ENST00000527297/Upstream/1334638; ENST00000532562/Downstream/5684;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1422450, chr11-CpG: 49/Downstream/5378972
Nearby gene
LINC02760(+5684) ;
Upstream sequence
CTAGGGATAAACAGAATGGACATTAAGATAatttactggaagctttccatttaacagatattattctgagtacttgacaacaataaattcatctaatcct
Downstream sequence
cacaactaccctgagaaataagCTAAATTTACTCCAGAATATAAGCTCTATTTTTCTTGGTATCAAGCTGGTATCAAGCTGTTGCTAGAAAATGGCTGAC
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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