GRIA4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10005232
Fusion event
HBV-GRIA4 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1816
Orient
+
Integrated sequence
GTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGT
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
105546508/105675781 (Hg38)
End
105546508/105675781 (Hg38)
Orient
+
Location type
Intron
Target gene
GRIA4
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-mir-10392/Upstream/1825801; hsa-let-7a-2/Downstream/5671976;
Nearest TSS
ENST00000527297/Upstream/64783; ENST00000527687/Downstream/167002;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/65086, chr11-CpG: 26/Downstream/346217
Junction sequence
T
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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