Basic Information
VIS ID
TVIS10005249
Fusion event
HBV-chr14 integration
Validated
No
Detection method
PCR and Ultra-deep sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
29861854
Virus Sequence
Virus name
HBV
Reference genome
AP011098
Start
1833
Orient
-
Integrated sequence
GAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTG| |CCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCT
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98058504/97592167 (Hg38)
End
98058504/97592167 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/2454181; hsa-mir-1185-1/Downstream/2517252;
Nearest TSS
ENST00000550708/Upstream/133297; ENST00000557072/Downstream/94460;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/372558, chr14-CpG: 53/Downstream/1525901
Upstream sequence
CTTTTCCCCCCTAAGTCACACGGCTATGGGTACTCACCATTAATCTTCCTTTCTCATAGATGTTTTCTTTCCGAAACAGTACTTAACAGGGATAAATGTG
Downstream sequence
GCACTCATTTTGCCTTTCATTCATTTTTATTCTCTTATTAGTGTGAAAGATAACatggagcatgttctgcgggccaggcactgtgctaggtaatttacat
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate